splinesurv

Table of Contents Index Definitions Functions Modules

TABLE OF CONTENTS

• 1. /00main
• 1.1. 00main/splinesurv.agdata
• 1.2. 00main/SplineSurvMainLoop
• 2. /01structures
• 2.1. 01structures/CCurve
• 2.2. 01structures/CHistory
• 2.3. 01structures/CRegression
• 2.4. 01structures/RCurve
• 2.5. 01structures/RHistory
• 2.6. 01structures/RRegression
• 3. /CFitting
• 3.1. CFitting/CcurveUpdate
• 3.1.1. CcurveUpdate/EvalCurveAtOnePoint
• 3.1.2. CcurveUpdate/EvalParamAtOnePoint
• 3.1.3. CcurveUpdate/EvalParametric
• 3.1.4. CcurveUpdate/EvalSpline
• 3.1.5. CcurveUpdate/EvalSplineAtOnePoint
• 3.1.6. CcurveUpdate/FrailtySplineVar
• 3.1.7. CcurveUpdate/MakeSplineBasis
• 3.1.8. CcurveUpdate/PopulateLocalCurve
• 3.1.9. CcurveUpdate/PopulateLocalHistory
• 3.1.10. CcurveUpdate/PopulateLocalRegression
• 3.1.11. CcurveUpdate/RemakeSplineBasis
• 3.1.12. CcurveUpdate/ReweightCurve
• 3.1.13. CcurveUpdate/UpdateCurveX
• 3.1.14. CcurveUpdate/UpdateParamPar
• 3.1.15. CcurveUpdate/UpdateSplineBasis
• 3.1.16. CcurveUpdate/UpdateSplinePar
• 3.2. CFitting/CDefines
• 3.2.1. CDefines/DEBUG
• 3.2.2. CDefines/enumDistribution
• 3.2.3. CDefines/enumNknotsPrior
• 3.2.4. CDefines/enumPenalty
• 3.2.5. CDefines/LIK_MOD
• 3.2.6. CDefines/MAX_PAR
• 3.3. CFitting/CmakeLikelihood
• 3.3.1. CmakeLikelihood/LikelihoodFrailty
• 3.3.2. CmakeLikelihood/LikelihoodFrailtyLogSum
• 3.3.3. CmakeLikelihood/LikelihoodHazardLogSum
• 3.3.4. CmakeLikelihood/LikelihoodParamFrailty
• 3.3.5. CmakeLikelihood/LikelihoodParamHazard
• 3.3.6. CmakeLikelihood/LikelihoodRegression
• 3.3.7. CmakeLikelihood/LikelihoodSplineFrailty
• 3.3.8. CmakeLikelihood/LikelihoodSplineHazard
• 3.3.9. CmakeLikelihood/LikelihoodWeightFrailty
• 3.3.10. CmakeLikelihood/LikelihoodWeightHazard
• 3.3.11. CmakeLikelihood/SmoothnessPenalty
• 3.4. CFitting/CMetropolisHastings
• 3.4.1. CMetropolisHastings/AcceptReject
• 3.4.2. CMetropolisHastings/MH_BDM
• 3.4.3. CMetropolisHastings/MH_Frail
• 3.4.4. CMetropolisHastings/MH_ParamFrailty
• 3.4.5. CMetropolisHastings/MH_ParamHazard
• 3.4.6. CMetropolisHastings/MH_Regression
• 3.4.7. CMetropolisHastings/MH_SplineFrailty
• 3.4.8. CMetropolisHastings/MH_SplineHazard
• 3.4.9. CMetropolisHastings/MH_Weight
• 3.4.10. CMetropolisHastings/UpdatePostvarCurve
• 3.4.11. CMetropolisHastings/UpdatePostvarRegression
• 3.5. CFitting/CmiscUtils
• 3.5.1. CmiscUtils/dcopyWrapper
• 3.5.2. CmiscUtils/ddotWrapper
• 3.5.3. CmiscUtils/dfactorial
• 3.5.4. CmiscUtils/diagmvWrapper
• 3.5.5. CmiscUtils/dmax
• 3.5.6. CmiscUtils/dmin
• 3.5.7. CmiscUtils/dnegbin
• 3.5.8. CmiscUtils/EvalNknotsPrior
• 3.5.9. CmiscUtils/getListElement
• 3.5.10. CmiscUtils/imax
• 3.5.11. CmiscUtils/imin
• 3.5.12. CmiscUtils/mvrnorm
• 3.5.13. CmiscUtils/rinvgamma
• 3.5.14. CmiscUtils/UpdateHistory
• 3.6. CFitting/CsplineUtils
• 3.6.1. CsplineUtils/cevalBinte
• 3.6.2. CsplineUtils/cevalCinte
• 3.6.3. CsplineUtils/cevalCinte2
• 3.6.4. CsplineUtils/cevalCinteOld
• 3.6.5. CsplineUtils/cevalEinte
• 3.6.6. CsplineUtils/cnBsmom
• 3.6.7. CsplineUtils/cSplineConvolution
• 3.6.8. CsplineUtils/cSplineDerivInt
• 3.6.9. CsplineUtils/csplinedesign
• 3.6.10. CsplineUtils/csplineeval
• 4. /initRoutine
• 4.1. initRoutine/CinitRoutine
• 4.1.1. CinitRoutine/addInitSmoothnessPenaltyGr
• 4.1.2. CinitRoutine/cInitGrHazSpline
• 4.1.3. CinitRoutine/cInitLikFrailSpline
• 4.1.4. CinitRoutine/cInitLikHazSpline
• 4.1.5. CinitRoutine/cInitMultAndWeight
• 4.1.6. CinitRoutine/cMakePenalty2diff
• 4.1.7. CinitRoutine/InitSmoothnessPenalty
• 4.2. initRoutine/fitparametric
• 4.3. initRoutine/inithistory
• 4.4. initRoutine/inverthessian
• 4.5. initRoutine/makeknots
• 4.6. initRoutine/makepenalty
• 4.7. initRoutine/makePenalty.2deriv
• 4.8. initRoutine/makePenalty.2diff
• 4.9. initRoutine/nknotsPriorMean
• 4.10. initRoutine/numHess.par
• 5. /RFitting
• 5.1. RFitting/curveUpdate
• 5.1.1. curveUpdate/evalparametric
• 5.1.2. curveUpdate/evalspline
• 5.1.3. curveUpdate/updatecurvex
• 5.1.4. curveUpdate/updatehistory
• 5.1.5. curveUpdate/updateparametric
• 5.1.6. curveUpdate/updateregression
• 5.1.7. curveUpdate/updatespline
• 5.1.8. curveUpdate/weightcurve
• 5.2. RFitting/CWrappers
• 5.2.1. CWrappers/cevalBinte
• 5.2.2. CWrappers/cevalCinte
• 5.2.3. CWrappers/cevalEinte
• 5.2.4. CWrappers/cmakePenalty.2deriv
• 5.2.5. CWrappers/cmkgr.spline.haz
• 5.2.6. CWrappers/cmklik.spline.frail
• 5.2.7. CWrappers/cmklik.spline.haz
• 5.2.8. CWrappers/csplinedesign
• 5.3. RFitting/makeLikelihood
• 5.3.1. makeLikelihood/mkgr.spline.haz
• 5.3.2. makeLikelihood/mkhess.coef
• 5.3.3. makeLikelihood/mklik.coef
• 5.3.4. makeLikelihood/mklik.frail
• 5.3.5. makeLikelihood/mklik.param.frail
• 5.3.6. makeLikelihood/mklik.param.haz
• 5.3.7. makeLikelihood/mklik.spline.frail
• 5.3.8. makeLikelihood/mklik.spline.frail.init
• 5.3.9. makeLikelihood/mklik.spline.haz
• 5.3.10. makeLikelihood/mklik.weight.frail
• 5.3.11. makeLikelihood/mklik.weight.haz
• 5.3.12. makeLikelihood/smoothpen
• 5.4. RFitting/MetropolisHastings
• 5.4.1. MetropolisHastings/acceptreject
• 5.4.2. MetropolisHastings/mh
• 5.4.3. MetropolisHastings/mh.bdm
• 5.4.4. MetropolisHastings/mh.coef
• 5.4.5. MetropolisHastings/mh.frail
• 5.4.6. MetropolisHastings/mh.frailty.param
• 5.4.7. MetropolisHastings/mh.frailty.spline
• 5.4.8. MetropolisHastings/mh.hazard.param
• 5.4.9. MetropolisHastings/mh.hazard.spline
• 5.4.10. MetropolisHastings/mh.weight
• 5.4.11. MetropolisHastings/updatepostvar.coef
• 5.4.12. MetropolisHastings/updatepostvar.curve
• 5.5. RFitting/miscUtils
• 5.5.1. miscUtils/accrate.predict.lm
• 5.5.2. miscUtils/haspar
• 5.5.3. miscUtils/hasspline
• 5.5.4. miscUtils/makeoutputcurve
• 5.5.5. miscUtils/mdiag
• 5.5.6. miscUtils/repairfrailtypar
• 5.5.7. miscUtils/submean
• 5.6. RFitting/splineUtils
• 5.6.1. splineUtils/evalBinte
• 5.6.2. splineUtils/evalCinte
• 5.6.3. splineUtils/evalEinte
• 5.6.4. splineUtils/frailtysplinefvar
• 5.6.5. splineUtils/ki
• 5.6.6. splineUtils/makesplinebasis
• 5.6.7. splineUtils/mysplineDesign
• 5.6.8. splineUtils/nBsmom
• 5.6.9. splineUtils/nknotsPrior
• 5.6.10. splineUtils/plotspline
• 5.6.11. splineUtils/splineconv
• 5.6.12. splineUtils/splinederivint
• 5.7. RFitting/ZZdebug
• 5.7.1. ZZdebug/rmkgr.spline.haz
• 5.7.2. ZZdebug/rmklik.spline.haz
• 6. /S3Methods
• 6.1. S3Methods/plot.splinesurv
• 6.2. S3Methods/post.fvar
• 6.3. S3Methods/predict.splinesurv
• 6.4. S3Methods/print.splinesurv
• 6.5. S3Methods/print.summary.splinesurv
• 6.6. S3Methods/printcurvesummary
• 6.7. S3Methods/splinesurv
• 6.8. S3Methods/splinesurv.data.frame
• 6.9. S3Methods/splinesurv.formula
• 6.10. S3Methods/splinesurvtkplot
• 6.11. S3Methods/summary.splinesurv
• 7. /simSurvival
• 7.1. simSurvival/bs.survfn
• 7.2. simSurvival/dnegbin
• 7.3. simSurvival/generateevents
• 7.4. simSurvival/generaterandom
• 7.5. simSurvival/makeagdata
• 7.6. simSurvival/MYmvrnorm
• 7.7. simSurvival/rinvgamma
• 7.8. simSurvival/sim.sample

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