Index

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z - 0 - 1 - 2 - 3 - 4 - 5 - 6 - 7 - 8 - 9

0

00main 01structures

A

AcceptReject acceptreject accrate.predict.lm addInitSmoothnessPenaltyGr

B

bs.survfn

C

CCurve CcurveUpdate CDefines cevalBinte cevalBinte cevalCinte cevalCinte cevalCinte2 cevalCinteOld cevalEinte cevalEinte CFitting CHistory cInitGrHazSpline cInitLikFrailSpline cInitLikHazSpline cInitMultAndWeight CinitRoutine CmakeLikelihood cmakePenalty.2deriv cMakePenalty2diff CMetropolisHastings CmiscUtils cmkgr.spline.haz cmklik.spline.frail cmklik.spline.haz cnBsmom CRegression cSplineConvolution cSplineDerivInt csplinedesign csplinedesign csplineeval CsplineUtils curveUpdate CWrappers

D

dcopyWrapper ddotWrapper DEBUG dfactorial diagmvWrapper dmax dmin dnegbin dnegbin

E

enumDistribution enumNknotsPrior enumPenalty evalBinte evalCinte EvalCurveAtOnePoint evalEinte EvalNknotsPrior EvalParamAtOnePoint EvalParametric evalparametric evalspline EvalSpline EvalSplineAtOnePoint

F

fitparametric frailtysplinefvar FrailtySplineVar

G

generateevents generaterandom getListElement

H

haspar hasspline

I

imax imin inithistory initRoutine InitSmoothnessPenalty inverthessian

K

ki

L

LIK_MOD LikelihoodFrailty LikelihoodFrailtyLogSum LikelihoodHazardLogSum LikelihoodParamFrailty LikelihoodParamHazard LikelihoodRegression LikelihoodSplineFrailty LikelihoodSplineHazard LikelihoodWeightFrailty LikelihoodWeightHazard

M

makeagdata makeknots makeLikelihood makeoutputcurve makepenalty makePenalty.2deriv makePenalty.2diff MakeSplineBasis makesplinebasis MAX_PAR mdiag MetropolisHastings mh mh.bdm mh.coef mh.frail mh.frailty.param mh.frailty.spline mh.hazard.param mh.hazard.spline mh.weight MH_BDM MH_Frail MH_ParamFrailty MH_ParamHazard MH_Regression MH_SplineFrailty MH_SplineHazard MH_Weight miscUtils mkgr.spline.haz mkhess.coef mklik.coef mklik.frail mklik.param.frail mklik.param.haz mklik.spline.frail mklik.spline.frail.init mklik.spline.haz mklik.weight.frail mklik.weight.haz mvrnorm MYmvrnorm mysplineDesign

N

nBsmom nknotsPrior nknotsPriorMean numHess.par

P

plot.splinesurv plotspline PopulateLocalCurve PopulateLocalHistory PopulateLocalRegression post.fvar predict.splinesurv print.splinesurv print.summary.splinesurv printcurvesummary

R

RCurve RemakeSplineBasis repairfrailtypar ReweightCurve RFitting RHistory rinvgamma rinvgamma rmkgr.spline.haz rmklik.spline.haz RRegression

S

S3Methods sim.sample simSurvival SmoothnessPenalty smoothpen splineconv splinederivint splinesurv splinesurv.agdata splinesurv.data.frame splinesurv.formula SplineSurvMainLoop splinesurvtkplot splineUtils submean summary.splinesurv

U

UpdateCurveX updatecurvex UpdateHistory updatehistory updateparametric UpdateParamPar updatepostvar.coef updatepostvar.curve UpdatePostvarCurve UpdatePostvarRegression updateregression updatespline UpdateSplineBasis UpdateSplinePar

W

weightcurve

Z

ZZdebug

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z - 0 - 1 - 2 - 3 - 4 - 5 - 6 - 7 - 8 - 9